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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER14631.1Capsular exopolysaccharide family. (737 aa)    
Predicted Functional Partners:
SER14615.1
Polysaccharide export outer membrane protein.
 
 0.999
SER15014.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
 
 
 0.998
SEQ95487.1
Protein involved in polysaccharide export, contains SLBB domain of the beta-grasp fold.
  
 0.996
SER06689.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
 
 
 0.984
SER14654.1
Protein-tyrosine phosphatase.
  
 0.982
SER14599.1
Uncharacterized protein, PEP-CTERM system associated.
 
  
 0.980
SEQ50934.1
NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit.
     
 0.978
SER06671.1
NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
 
 
 0.953
SER14870.1
Mannose-1-phosphate guanylyltransferase (GDP); Belongs to the mannose-6-phosphate isomerase type 2 family.
 
 
 0.953
SER06767.1
UDP-glucose 4-epimerase.
  
 
 0.947
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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