STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER20170.1Nitrogenase-associated protein; Belongs to the ArsC family. (137 aa)    
Predicted Functional Partners:
SER20199.1
Nitrogen fixation protein NifB.
 
   
 0.949
SER20144.1
SagB-type dehydrogenase domain-containing protein.
     0.932
SER20165.1
Nitrogen fixation protein NifQ.
 
  
 0.891
SEQ20004.1
Thiol:disulfide interchange protein DsbA.
   
 
 0.853
SER20191.1
4Fe-4S dicluster domain-containing protein.
 
     0.834
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.813
SER20113.1
Ankyrin repeat-containing protein.
 
     0.812
SER20057.1
Ferredoxin.
 
 
   0.774
SEQ47294.1
Probable nitrogen fixation protein.
 
     0.773
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.773
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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