Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SER21059.1Type VI secretion system protein ImpK. (465 aa)    
Predicted Functional Partners:
SER21087.1
Type VI secretion system protein ImpM.
 
  
 0.996
SER21478.1
Type VI secretion system protein ImpC.
 
  
 0.996
SER21032.1
Type VI secretion system protein VasD.
 
  
 0.992
SER21044.1
Type VI secretion system protein ImpJ.
  
 0.991
SER21075.1
Type VI secretion system protein ImpL.
 
 
 0.989
SER21489.1
Type VI secretion system protein ImpB.
 
  
 0.988
SER21449.1
Type VI secretion system protein ImpG.
 
  
 0.981
SEQ29432.1
Chemotaxis protein MotA.
 
 0.944
SER07287.1
Chemotaxis protein MotA.
 
 0.942
SER21432.1
Type VI secretion, VasB, ImpH, VC_A0111.
 
  
 0.914
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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