STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER21432.1Type VI secretion, VasB, ImpH, VC_A0111. (423 aa)    
Predicted Functional Partners:
SER21504.1
Type VI secretion system protein VasJ.
 
 
 0.986
SER21478.1
Type VI secretion system protein ImpC.
 
 
 0.981
SER21458.1
Type VI secretion system protein.
 
  
 0.980
SER21449.1
Type VI secretion system protein ImpG.
  
 0.979
SER21489.1
Type VI secretion system protein ImpB.
 
 
 0.978
SER21418.1
Type VI secretion system protein VasG; Belongs to the ClpA/ClpB family.
 
 0.961
SER21059.1
Type VI secretion system protein ImpK.
 
  
 0.959
SER21357.1
Rhs element Vgr protein.
 
 
 0.954
SER21044.1
Type VI secretion system protein ImpJ.
 
 
 0.944
SER21020.1
Type VI secretion system secreted protein Hcp.
 
 
 0.929
Your Current Organism:
Amphritea atlantica
NCBI taxonomy Id: 355243
Other names: A. atlantica, Amphritea atlantica Gartner et al. 2008 emend. Jang et al. 2015, DSM 18887, LMG 24143, LMG:24143, gamma proteobacterium M41, strain M41
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.