STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ42_028383Small nuclear ribonucleoprotein-associated protein. (234 aa)    
Predicted Functional Partners:
APZ42_029321
Small nuclear ribonucleoprotein Sm D2.
   
 0.997
EOG090X0NFO
Small nuclear ribonucleoprotein Sm D3.
   
 0.997
APZ42_011146
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.996
APZ42_032863
Small nuclear ribonucleoprotein F; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.996
APZ42_022523
Uncharacterized protein.
   
 0.996
APZ42_013549
Small nuclear ribonucleoprotein G.
   
 0.996
APZ42_020155
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.991
APZ42_007124
Matrin-type domain-containing protein.
   
 0.989
EOG090X00RJ
116 kDa U5 small nuclear ribonucleoprotein component protein.
   
 0.987
APZ42_022232
U2 small nuclear ribonucleoprotein A.
   
 0.986
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.