STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EOG090X017XPre-mRNA-processing factor 6. (926 aa)    
Predicted Functional Partners:
APZ42_018093
Putative ATP-dependent RNA helicase DDX52.
   
 0.999
APZ42_034342
U5 small nuclear ribonucleoprotein 40 kDa protein.
   
 0.999
APZ42_016996
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
    
 0.999
APZ42_015980
Pre-mRNA-processing-splicing factor 8.
   
 0.999
EOG090X00RJ
116 kDa U5 small nuclear ribonucleoprotein component protein.
   
 0.999
APZ42_029594
Putative U5 small nuclear ribonucleoprotein 200 kDa helicase.
   
 0.999
APZ42_013619
U4/U6.U5 tri-snRNP-associated protein 1.
   
 0.998
EOG090X0NFO
Small nuclear ribonucleoprotein Sm D3.
   
 0.998
APZ42_029855
U4/U6 small nuclear ribonucleoprotein Prp4.
   
 0.997
APZ42_011764
Putative U4/U6 small nuclear ribonucleoprotein Prp31.
   
 0.997
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.