STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ42_028328SURP and G-patch domain-containing protein. (511 aa)    
Predicted Functional Partners:
APZ42_030507
Pre-mRNA-splicing factor ATP-dependent RNA Helicase DHX15.
    
 0.994
APZ42_028962
Splicing factor 45.
   
 
 0.974
APZ42_016659
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
    
 
 0.966
APZ42_020792
RNA-binding protein 10.
    
 0.952
APZ42_002855
Putative Pre-mrna splicing factor atp-dependent rna helicase prp16.
    
 0.813
APZ42_016138
Putative Splicing factor 1.
   
 0.767
APZ42_019444
ATP-dependent RNA helicase A protein.
    
  0.730
APZ42_011461
Uncharacterized protein.
   
 
 0.725
APZ42_023527
Uncharacterized protein.
    
  0.708
APZ42_018616
Putative Serine/threonine-protein phosphatase 1 regulatory subunit.
    
 0.705
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.