STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ42_030563Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (803 aa)    
Predicted Functional Partners:
APZ42_019396
Transport protein Sec31A.
   
 0.999
EOG090X07N7
SEC13 protein; Belongs to the WD repeat SEC13 family.
   
 0.999
EOG090X0HBC
EOG090X0HBC; Belongs to the synaptobrevin family.
   
 0.999
APZ42_033286
Protein transport protein Sec24C.
   
 0.999
APZ42_023261
Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.
    
 0.996
APZ42_011545
Protein transport Sec16A-like protein.
   
 0.993
APZ42_019750
Transport Sec24B,-like protein.
   
 0.991
APZ42_013796
Uncharacterized protein.
   
 0.991
APZ42_021533
Transport protein Sec24B protein.
   
 0.991
APZ42_004973
Ankyrin repeat domain-containing protein 40.
   
 0.987
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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