STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ42_010864Nuclear receptor subfamily 4 group A member. (579 aa)    
Predicted Functional Partners:
RXR
Retinoic acid receptor RXR-alpha-A.
  
0.971
APZ42_015142
Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
    
 0.941
APZ42_019853
Nuclear receptor corepressor.
    
 0.918
APZ42_016876
Bile acid receptor.
   
0.895
APZ42_031134
Uncharacterized protein.
    
 0.779
APZ42_031138
Uncharacterized protein.
    
 0.779
APZ42_031130
Uncharacterized protein.
    
 0.760
APZ42_014162
Putative Histone deacetylase silent information regulator protein Sir2.
    
 0.739
EOG090X0770
Pre-mRNA-splicing factor RBM22.
    
  0.706
APZ42_026543
Peroxisome proliferator-activated receptor gamma coactivator-related-like protein.
    
  0.706
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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