STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ42_030794RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs; Belongs to the RtcB family. (505 aa)    
Predicted Functional Partners:
APZ42_016044
ATP-dependent RNA helicase Ddx1.
   
 0.981
EOG090X0IKX
Protein archease-like protein.
 
 0.976
EOG090X0ARU
UPF0568 protein.
   
 0.971
APZ42_015355
Schlafen protein.
   
 0.894
APZ42_030796
RNA 3'-terminal phosphate cyclase-like protein.
  
  
 0.878
APZ42_016909
Colorectal mutant cancer protein.
  
  
 0.824
EOG090X05X4
RNA 3'-terminal phosphate cyclase-like protein.
  
  
 0.824
APZ42_013553
Eukaryotic peptide chain release factor subunit 1.
  
    0.810
APZ42_034446
RING finger and SPRY domain-containing protein 1.
 
  
   0.740
EOG090X0665
Eukaryotic translation initiation factor 3 subunit L; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.
   
    0.727
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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