STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ42_022010WD repeat-containing protein 89. (409 aa)    
Predicted Functional Partners:
APZ42_025704
Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.
   
    0.657
APZ42_032634
WD repeat-containing protein 43.
   
    0.648
APZ42_020224
Ribosome production factor 2.
   
    0.495
APZ42_027188
Nucleolar protein 10.
   
    0.465
APZ42_024495
Putative ATP-dependent RNA helicase DDX56.
   
  
 0.436
APZ42_012733
ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily.
   
  
 0.426
APZ42_032779
WD repeat-containing protein 36.
   
    0.424
EOG090X058P
Cell adhesion complex protein bystin.
   
 
 0.423
APZ42_030478
Protein LTV1.
   
    0.420
APZ42_022572
Putative Ribosome biogenesis protein RLP24.
   
    0.416
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.