STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ42_013396DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family. (1184 aa)    
Predicted Functional Partners:
APZ42_014239
Transcription factor A, mitochondrial.
    
 0.991
APZ42_024064
rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.
   
 0.987
APZ42_013755
Putative Serum response factor binding protein.
   
 0.984
APZ42_033097
Uncharacterized protein.
    
 
 0.970
APZ42_013205
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  
 0.923
APZ42_029770
High mobility group protein 20A.
    
 0.821
APZ42_032631
High mobility group protein DSP1.
    
 0.821
APZ42_031373
Eukaryotic translation initiation factor 5B.
   
  
 0.821
APZ42_025175
Putative Transcription factor A, mitochondrial.
    
 0.821
APZ42_023978
Uncharacterized protein.
    
 0.821
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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