STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ42_028980Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. (524 aa)    
Predicted Functional Partners:
APZ42_030945
Cystathionine gamma-lyase.
 
 0.982
APZ42_030951
Eip55E.
 
 0.980
APZ42_005931
Cystathionine gamma-lyase-like protein.
  
 0.975
APZ42_033483
Phosphoserine phosphatase.
    
 0.969
APZ42_013795
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
 0.968
APZ42_015422
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
  
 
 0.967
APZ42_013661
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
  
 
 0.967
APZ42_003307
Putative Cystathionine gamma-lyase.
  
 0.966
APZ42_031710
Homocysteine S-methyltransferase ybgG.
    
 0.966
APZ42_013122
Serine--pyruvate aminotransferase.
  
 
 0.955
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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