STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ42_032305Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX. (333 aa)    
Predicted Functional Partners:
APZ42_018802
Geranylgeranyl transferase type-2 subunit alpha.
    
 0.999
APZ42_027037
PRL-1 phosphatase.
    
 0.981
APZ42_021219
Rab proteins geranylgeranyltransferase component A.
    
 0.964
APZ42_020965
Ras-related protein Rab-1A.
    
 0.937
APZ42_016501
Synaptobrevin YKT6; Belongs to the synaptobrevin family.
    
 
 0.920
APZ42_011883
F-box/LRR-repeat protein 20.
    
 
 0.864
APZ42_015159
Ras-related protein Rab-19.
    
 0.858
APZ42_025691
Uncharacterized protein.
    
 0.853
APZ42_018623
Gtp-binding protein parf partner of arf.
    
 0.840
APZ42_012420
Ras-related protein Rab-8A.
    
 0.821
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.