STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ42_016660RNA-binding protein. (578 aa)    
Predicted Functional Partners:
APZ42_015390
Putative MKI67 FHA domain-interacting nucleolar phosphoprotein.
   
 
 0.996
APZ42_031205
RRP12-like protein.
   
 
 0.994
APZ42_012518
CCAAT/enhancer-binding protein zeta.
   
 
 0.994
APZ42_023871
Pumilio domain-containing protein.
   
 
 0.993
EOG090X02QX
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
   
 
 0.992
APZ42_013259
Putative ATP-dependent RNA helicase DDX27; Belongs to the DEAD box helicase family.
   
 
 0.992
APZ42_033480
Putative ATP-dependent RNA helicase DDX49.
   
 
 0.990
APZ42_029158
RNA-binding protein.
   
 
 0.990
APZ42_015018
Suppressor of SWI4.
   
   0.990
APZ42_029236
Putative Ribosomal L1 domain-containing protein.
   
 
 0.990
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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