STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ42_020454Presenilins-associated rhomboid protein, mitochondrial. (342 aa)    
Predicted Functional Partners:
APZ42_013206
ATP-dependent Zinc metalloprotease YME1; Belongs to the AAA ATPase family.
   
 
 0.846
APZ42_018390
Prohibitin.
   
 0.782
APZ42_029246
Stomatin protein 2, mitochondrial.
   
 0.723
APZ42_014630
AFG3 2-like protein.
     
 0.667
APZ42_013828
AFG3 2-like protein.
     
 0.653
EOG090X01A3
Transmembrane GTPase Marf; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
    
 
 0.650
APZ42_023975
E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins.
    
 
 0.617
APZ42_019439
Optic atrophy 1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
    
 
 0.609
APZ42_030800
Metalloendopeptidase OMA1, mitochondrial.
    
 
 0.593
APZ42_028382
Prohibitin.
    
 0.592
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.