STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ42_008325Uncharacterized protein. (67 aa)    
Predicted Functional Partners:
APZ42_014918
DNA-directed RNA polymerases I and III subunit RPAC1.
  
 0.913
APZ42_012093
DNA-directed RNA polymerase II subunit RPB3.
  
 0.880
APZ42_028255
DNA-directed RNA polymerases I.
  
 0.869
APZ42_017655
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
  
 0.865
APZ42_013222
DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.
   
 0.859
APZ42_020316
DNA-directed RNA polymerase III subunit RPC3.
   
 0.858
APZ42_013798
DNA-directed RNA polymerase III subunit RPC4.
   
 0.858
APZ42_021819
Uncharacterized protein.
   
 0.853
EOG090X0DHL
DNA-directed RNA polymerase III subunit RPC8.
   
 0.852
APZ42_022875
DNA-directed RNA polymerase III subunit RPC9.
   
 0.851
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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