STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ42_002383Putative DNA-directed RNA polymerase subunit beta. (107 aa)    
Predicted Functional Partners:
APZ42_005470
Putative DNA-directed RNA polymerase subunit beta.
 
     0.951
APZ42_005758
DNA-directed RNA polymerase subunit beta.
 
     0.949
APZ42_012093
DNA-directed RNA polymerase II subunit RPB3.
  
 0.945
APZ42_017655
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
  
 0.938
APZ42_028255
DNA-directed RNA polymerases I.
  
 0.934
APZ42_026494
DNA-directed RNA polymerases I, II, and III subunit RPABC4.
   
 0.900
EOG090X0PCK
DNA-directed RNA polymerases I, II, and III subunit RPABC5.
   
 0.898
APZ42_014918
DNA-directed RNA polymerases I and III subunit RPAC1.
  
 0.898
APZ42_017061
DNA-directed RNA polymerase II subunit RPB7.
    
 0.894
APZ42_022464
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
    
 0.894
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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