STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ42_005785Putative Retinal dehydrogenase 1. (135 aa)    
Predicted Functional Partners:
APZ42_022327
Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.
    
 0.909
APZ42_028177
Putative N-acetylserotonin O-methyltransferase protein.
  
 
 0.864
APZ42_018618
Hydroxysteroid dehydrogenase 2-like protein; Belongs to the G-protein coupled receptor 1 family.
  
 0.832
APZ42_030783
Hydroxysteroid dehydrogenase protein 2.
  
 0.832
APZ42_010917
Bifunctional glutamate/proline--tRNA ligase.
  
 
 0.798
APZ42_013623
Deoxyribose-phosphate aldolase.
  
 0.763
APZ42_033871
Leucine-rich repeat kinase.
   
 0.714
APZ42_016392
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 0.706
APZ42_028980
Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
  
 0.702
EOG090X0BSC
Triosephosphate isomerase.
   
 0.700
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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