STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
APZ42_005785Putative Retinal dehydrogenase 1. (135 aa)    
Predicted Functional Partners:
APZ42_022327
Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.
    
 0.786
APZ42_013623
Deoxyribose-phosphate aldolase.
   
 0.781
APZ42_018618
Hydroxysteroid dehydrogenase 2-like protein; Belongs to the G-protein coupled receptor 1 family.
  
 0.748
APZ42_030783
Hydroxysteroid dehydrogenase protein 2.
  
 0.748
EOG090X0BSC
Triosephosphate isomerase.
   
 0.699
APZ42_023703
Fumarate hydratase, mitochondrial.
   
 0.693
APZ42_032739
Sorbitol dehydrogenase.
  
 0.670
APZ42_034295
60 kDa heat shock protein, mitochondrial; Belongs to the chaperonin (HSP60) family.
    
 0.665
APZ42_021839
Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family.
   
 0.648
APZ42_005416
TPP_enzyme_C domain-containing protein.
   
 0.633
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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