STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ42_014457Putative Translocation protein SEC62. (182 aa)    
Predicted Functional Partners:
APZ42_023953
Translocation protein SEC63.
   
 0.998
EOG090X03O4
Transport protein Sec61 subunit alpha 1.
   
 
 0.959
APZ42_033874
Putative Serine/threonine-protein kinase STE20.
    
 
 0.957
EOG090X0RAK
Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.
    
 
 0.925
APZ42_033269
Putative Serine/threonine-protein kinase STE20.
    
 
 0.897
APZ42_029594
Putative U5 small nuclear ribonucleoprotein 200 kDa helicase.
     
 0.815
APZ42_034079
Putative U5 small nuclear ribonucleoprotein 200 kDa helicase.
     
 0.718
APZ42_010462
Signal peptidase complex subunit 2.
    
 
 0.624
APZ42_019356
Signal peptidase complex subunit 1.
    
 
 0.620
APZ42_011329
HEAT shock 70 kDa protein cognate 4; Belongs to the heat shock protein 70 family.
    
 
 0.503
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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