STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ42_013877Neuroblastoma-amplified sequence. (2366 aa)    
Predicted Functional Partners:
APZ42_027873
Centromere/kinetochore protein zw10.
    
 0.999
APZ42_017485
RAD50-interacting protein.
    
 0.997
APZ42_026739
Vesicle transport protein USE1.
    
 0.992
APZ42_015820
Syntaxin-18.
    
 0.992
APZ42_015654
Non-specific serine/threonine protein kinase.
    
 0.956
APZ42_018131
Non-specific serine/threonine protein kinase.
    
 0.956
EOG090X0HBC
EOG090X0HBC; Belongs to the synaptobrevin family.
    
 0.879
APZ42_011928
Putative Gamma-soluble NSF attachment protein.
    
 0.860
APZ42_016183
Gamma-soluble NSF attachment protein.
    
 0.860
EOG090X01FO
Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
    
  0.771
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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