STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ42_005047ATP-dependent RNA Helicase me31b. (121 aa)    
Predicted Functional Partners:
APZ42_025991
PAT1 1 protein.
   
 0.947
LSM1
U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.
    
 0.946
EOG090X0KYU
U6 snRNA-associated Sm LSm7-like protein.
    
 0.944
APZ42_027184
Protein LSM14 B.
   
 
 0.920
APZ42_023254
YjeF N-terminal domain-containing protein.
   
 0.906
EOG090X07B6
mRNA-decapping enzyme 1B.
   
 0.904
APZ42_025064
CCR4-NOT transcription complex subunit.
   
 0.882
APZ42_024658
mRNA-decapping enzyme 2.
    
 0.878
LSM4
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 0.868
APZ42_019608
Eukaryotic translation initiation factor 4E transporter.
  
 0.845
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.