STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ42_034074Putative Collagen alpha-1(XIII) chain. (569 aa)    
Predicted Functional Partners:
APZ42_026444
MAM domain-containing glycosylphosphatidylinositol anchor protein 1.
    
 0.794
APZ42_033871
Leucine-rich repeat kinase.
    
 0.705
APZ42_026439
Uncharacterized protein.
    
 0.620
APZ42_024378
Uncharacterized protein.
  
 
  0.618
APZ42_027628
Death-associated protein kinase 2.
    
  0.608
APZ42_027666
Putative Stretchin-Mlck.
    
  0.608
APZ42_019374
Uncharacterized protein.
    
 0.608
APZ42_017757
Putative Fibronectin type-III domain-containing protein 3A.
    
 0.608
APZ42_011273
Laminin subunit gamma-3.
   
 0.591
APZ42_032463
Target of rapamycin complex subunit LST8.
    
  0.573
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.