APZ42_031591 protein (Daphnia magna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

APZ42_031591

Reverse transcriptase domain-containing protein. (852 aa)

Predicted Functional Partners:

APZ42_012930

0.842

APZ42_011476

0.825

EOG090X0FQ5

0.813

APZ42_013463

0.813

EOG090X0KAD

0.810

APZ42_027275

0.796

APZ42_020228

0.792

EOG090X0IZW

0.787

EOG090X0DE4

0.783

APZ42_033990

0.782

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_011476	APZ42_012930	A0A162SPF6	A0A0P5W4B7	39S ribosomal protein L49.	28S ribosomal protein S10, mitochondrial.	0.977
APZ42_011476	APZ42_013463	A0A162SPF6	A0A0P5T152	39S ribosomal protein L49.	28S ribosomal protein S2, mitochondrial.	0.970
APZ42_011476	APZ42_020228	A0A162SPF6	A0A0N8D503	39S ribosomal protein L49.	39S ribosomal protein L30, mitochondrial.	0.989
APZ42_011476	APZ42_027275	A0A162SPF6	A0A0P6H7Z8	39S ribosomal protein L49.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.995
APZ42_011476	APZ42_031591	A0A162SPF6	A0A164MQE9	39S ribosomal protein L49.	Reverse transcriptase domain-containing protein.	0.825
APZ42_011476	APZ42_033990	A0A162SPF6	A0A0P5XHY9	39S ribosomal protein L49.	28S ribosomal protein S15, mitochondrial; Belongs to the universal ribosomal protein uS15 family.	0.989
APZ42_011476	EOG090X0DE4	A0A162SPF6	A0A164KVE8	39S ribosomal protein L49.	39S ribosomal protein L16, mitochondrial.	0.982
APZ42_011476	EOG090X0FQ5	A0A162SPF6	A0A0P5INX7	39S ribosomal protein L49.	28S ribosomal protein S25, mitochondrial.	0.990
APZ42_011476	EOG090X0IZW	A0A162SPF6	A0A0P5Q3H5	39S ribosomal protein L49.	39S ribosomal protein L41, mitochondrial.	0.985
APZ42_011476	EOG090X0KAD	A0A162SPF6	A0A0P5ZLV5	39S ribosomal protein L49.	28S ribosomal protein S16, mitochondrial.	0.975
APZ42_012930	APZ42_011476	A0A0P5W4B7	A0A162SPF6	28S ribosomal protein S10, mitochondrial.	39S ribosomal protein L49.	0.977
APZ42_012930	APZ42_013463	A0A0P5W4B7	A0A0P5T152	28S ribosomal protein S10, mitochondrial.	28S ribosomal protein S2, mitochondrial.	0.999
APZ42_012930	APZ42_020228	A0A0P5W4B7	A0A0N8D503	28S ribosomal protein S10, mitochondrial.	39S ribosomal protein L30, mitochondrial.	0.974
APZ42_012930	APZ42_027275	A0A0P5W4B7	A0A0P6H7Z8	28S ribosomal protein S10, mitochondrial.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.996
APZ42_012930	APZ42_031591	A0A0P5W4B7	A0A164MQE9	28S ribosomal protein S10, mitochondrial.	Reverse transcriptase domain-containing protein.	0.842
APZ42_012930	APZ42_033990	A0A0P5W4B7	A0A0P5XHY9	28S ribosomal protein S10, mitochondrial.	28S ribosomal protein S15, mitochondrial; Belongs to the universal ribosomal protein uS15 family.	0.999
APZ42_012930	EOG090X0DE4	A0A0P5W4B7	A0A164KVE8	28S ribosomal protein S10, mitochondrial.	39S ribosomal protein L16, mitochondrial.	0.989
APZ42_012930	EOG090X0FQ5	A0A0P5W4B7	A0A0P5INX7	28S ribosomal protein S10, mitochondrial.	28S ribosomal protein S25, mitochondrial.	0.999
APZ42_012930	EOG090X0IZW	A0A0P5W4B7	A0A0P5Q3H5	28S ribosomal protein S10, mitochondrial.	39S ribosomal protein L41, mitochondrial.	0.966
APZ42_012930	EOG090X0KAD	A0A0P5W4B7	A0A0P5ZLV5	28S ribosomal protein S10, mitochondrial.	28S ribosomal protein S16, mitochondrial.	0.999