STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ42_031563Reverse transcriptase domain-containing protein. (987 aa)    
Predicted Functional Partners:
APZ42_027865
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
  0.872
APZ42_026295
BRCA1-associated RING domain protein 1.
    
 0.778
APZ42_003214
Putative Cytochrome b.
    
 0.728
APZ42_032750
PP1c_bdg domain-containing protein.
    
 0.728
APZ42_024534
60S ribosomal protein L21.
   
   0.666
APZ42_031040
Ubiquitin-60S ribosomal protein L40.
    
  0.645
APZ42_025965
60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
    
 0.641
APZ42_005620
Ubiquitin-40S ribosomal protein S27a.
    
  0.633
APZ42_017594
60S ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.
   
   0.623
APZ42_033871
Leucine-rich repeat kinase.
    
 0.620
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.