STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ42_028782Decaprenyl-diphosphate synthase subunit 2; Belongs to the FPP/GGPP synthase family. (332 aa)    
Predicted Functional Partners:
APZ42_019077
4-hydroxybenzoate polyprenyltransferase, mitochondrial; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate.
  
 
 0.858
APZ42_030708
Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
     
 0.832
APZ42_021410
NADH dehydrogenase (Ubiquinone) complex I, assembly factor.
  
 0.819
APZ42_031384
Farnesyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
    
 0.804
APZ42_026040
Alkyl transferase; Belongs to the UPP synthase family.
  
 
 0.797
APZ42_011829
Nogo-B receptor.
  
 
 0.790
APZ42_021140
Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprenes.
  
 0.784
APZ42_025328
Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.
    
 0.772
EOG090X08PK
Farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha protein.
     
 0.771
APZ42_015953
Isopentenyl-diphosphate Delta-isomerase 1.
  
 
 0.739
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.