STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ42_027020Cold shock domain-containing protein. (156 aa)    
Predicted Functional Partners:
EOG090X0NFO
Small nuclear ribonucleoprotein Sm D3.
   
 0.711
APZ42_018881
Symplekin.
    
 0.708
APZ42_020217
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requ [...]
   
  0.684
APZ42_032863
Small nuclear ribonucleoprotein F; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
  0.682
APZ42_013549
Small nuclear ribonucleoprotein G.
    
  0.680
APZ42_017655
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
  
 
 0.666
APZ42_012186
Tight junction protein ZO-1.
    
 0.662
APZ42_029321
Small nuclear ribonucleoprotein Sm D2.
    
  0.661
APZ42_027337
Heterogeneous nuclear ribonucleoprotein K.
    
 0.658
APZ42_023324
Putative U11/U12 small nuclear ribonucleoprotein 35 kDa protein.
   
 0.652
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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