STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ42_025236SWIM-type domain-containing protein. (1295 aa)    
Predicted Functional Partners:
APZ42_017609
Putative Bromodomain and PHD finger-containing protein.
    
 0.704
APZ42_020877
Transformation/transcription domain-associated protein; Belongs to the PI3/PI4-kinase family.
   
 0.632
APZ42_017650
Histone-binding protein RBBP4.
    
 0.621
EOG090X076S
DNA methyltransferase 1-associated protein.
    
 0.612
APZ42_016542
Transcription initiation factor TFIID subunit 1.
    
 0.570
APZ42_024009
Putative Transcription initiation factor TFIID subunit 2.
    
 0.567
APZ42_027379
Transcription initiation factor TFIID subunit 6.
    
 0.566
APZ42_013561
TAF6 RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L-like protein.
    
 0.566
APZ42_026399
Atherin-like protein.
    
 0.559
APZ42_014764
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
    
 0.559
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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