STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ42_024365Putative RNA pseudouridylate synthase domain-containing protein 2. (486 aa)    
Predicted Functional Partners:
APZ42_024661
RNA pseudouridylate synthase domain-containing protein 2.
 
      0.900
EOG090X0AI9
Putative 312 protein.
  
 
 0.750
APZ42_020261
tRNA modification GTPase GTPBP3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
  
 
 0.726
APZ42_020713
rRNA methyltransferase 3, mitochondrial.
  
 
 0.706
APZ42_013216
39S ribosomal protein L17, mitochondrial.
   
   0.701
APZ42_013323
39S ribosomal protein L21, mitochondrial.
   
   0.701
APZ42_016748
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 
 0.688
APZ42_016810
Mitochondrial ribosome-associated GTPase 1.
   
 
 0.664
APZ42_026400
39S ribosomal protein L11, mitochondrial; Belongs to the universal ribosomal protein uL11 family.
   
 
 0.659
APZ42_014760
Mitochondrial ribosomal protein L3.
   
 
 0.654
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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