STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ42_024017ASD2 domain-containing protein. (881 aa)    
Predicted Functional Partners:
APZ42_022907
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.
    
 0.818
APZ42_024542
Brahma associated protein 55kD; Belongs to the actin family.
   
 0.816
APZ42_014296
Actin-related protein 5; Belongs to the actin family.
    
 0.811
APZ42_021138
General transcription factor IIH subunit 1.
    
 0.797
APZ42_015388
TFIIH basal transcription factor complex helicase XPB subunit.
    
 0.787
APZ42_014299
General transcription factor IIH subunit.
    
 0.785
APZ42_013396
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.
    
 0.783
APZ42_029135
Histone H2A; Belongs to the histone H2A family.
   
 0.776
APZ42_018611
TFIIH basal transcription factor complex helicase XPD subunit.
    
 0.769
APZ42_005073
Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily.
    
 0.741
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.