EOG090X0AAB protein (Daphnia magna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EOG090X0AAB

tRNA--methyltransferase non-catalytic subunit TRM6. (388 aa)

Predicted Functional Partners:

APZ42_013634

0.999

APZ42_015421

0.953

APZ42_032025

0.929

APZ42_022290

0.911

APZ42_024495

0.909

APZ42_017641

0.891

APZ42_016273

0.880

APZ42_020224

0.879

APZ42_019571

0.876

APZ42_029158

0.852

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_013634	APZ42_015421	A0A162QNX8	A0A162PGK3	tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A; Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	0.930
APZ42_013634	APZ42_016273	A0A162QNX8	A0A165AIH5	tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A; Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.	tRNA (guanine(46)-N(7))-methyltransferase.	0.929
APZ42_013634	APZ42_017641	A0A162QNX8	A0A0P5PEL9	tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A; Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.	RNA helicase.	0.778
APZ42_013634	APZ42_019571	A0A162QNX8	A0A164Y9I0	tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A; Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.	Putative RNA-binding protein 19.	0.407
APZ42_013634	APZ42_020224	A0A162QNX8	A0A0P5BAM3	tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A; Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.	Ribosome production factor 2.	0.521
APZ42_013634	APZ42_022290	A0A162QNX8	A0A164VDQ8	tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A; Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.	WD repeat-containing protein 74.	0.744
APZ42_013634	APZ42_024495	A0A162QNX8	A0A164TXP7	tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A; Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.	Putative ATP-dependent RNA helicase DDX56.	0.842
APZ42_013634	APZ42_029158	A0A162QNX8	A0A0P5X8P6	tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A; Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.	RNA-binding protein.	0.626
APZ42_013634	APZ42_032025	A0A162QNX8	A0A164MC55	tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A; Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.	Ribosome biogenesis protein WDR12.	0.414
APZ42_013634	EOG090X0AAB	A0A162QNX8	A0A164UKV8	tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A; Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.	tRNA--methyltransferase non-catalytic subunit TRM6.	0.999
APZ42_015421	APZ42_013634	A0A162PGK3	A0A162QNX8	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A; Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.	0.930
APZ42_015421	APZ42_016273	A0A162PGK3	A0A165AIH5	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	tRNA (guanine(46)-N(7))-methyltransferase.	0.910
APZ42_015421	APZ42_017641	A0A162PGK3	A0A0P5PEL9	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	RNA helicase.	0.997
APZ42_015421	APZ42_019571	A0A162PGK3	A0A164Y9I0	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	Putative RNA-binding protein 19.	0.945
APZ42_015421	APZ42_020224	A0A162PGK3	A0A0P5BAM3	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	Ribosome production factor 2.	0.992
APZ42_015421	APZ42_022290	A0A162PGK3	A0A164VDQ8	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	WD repeat-containing protein 74.	0.997
APZ42_015421	APZ42_024495	A0A162PGK3	A0A164TXP7	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	Putative ATP-dependent RNA helicase DDX56.	0.969
APZ42_015421	APZ42_029158	A0A162PGK3	A0A0P5X8P6	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	RNA-binding protein.	0.976
APZ42_015421	APZ42_032025	A0A162PGK3	A0A164MC55	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	Ribosome biogenesis protein WDR12.	0.997
APZ42_015421	EOG090X0AAB	A0A162PGK3	A0A164UKV8	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	tRNA--methyltransferase non-catalytic subunit TRM6.	0.953