STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ42_024307Putative RanBP-type and C3HC4-type zinc finger-containing protein 1. (509 aa)    
Predicted Functional Partners:
APZ42_016797
Putative E3 ubiquitin-protein ligase RNF31.
   
0.998
APZ42_020409
DH domain-containing protein.
    
 0.943
APZ42_005840
Polyubiquitin-B.
    
 0.941
APZ42_021729
Polyubiquitin-B.
    
 0.941
APZ42_022974
Inactive ubiquitin thioesterase FAM105A.
    
 0.920
APZ42_005620
Ubiquitin-40S ribosomal protein S27a.
    
 0.823
APZ42_031040
Ubiquitin-60S ribosomal protein L40.
    
  0.792
APZ42_024062
Cylindromatosis.
    
 0.791
APZ42_016159
Spermatogenesis-associated protein 2 protein.
    
  0.765
APZ42_022927
Baculoviral IAP repeat-containing protein 6.
    
 0.753
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.