STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ42_022760Mitochondrial ribonuclease P protein 1. (434 aa)    
Predicted Functional Partners:
APZ42_016652
3-hydroxyacyl-CoA dehydrogenase type-2; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 0.992
APZ42_022301
PRORP domain-containing protein.
   
 0.989
APZ42_031508
Ribosome production factor 1.
   
  
 0.932
APZ42_021779
tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.
   
 
 0.731
APZ42_016273
tRNA (guanine(46)-N(7))-methyltransferase.
   
 
 0.714
EOG090X0AAB
tRNA--methyltransferase non-catalytic subunit TRM6.
   
  
 0.690
APZ42_015390
Putative MKI67 FHA domain-interacting nucleolar phosphoprotein.
   
   0.665
APZ42_013634
tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A; Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.
   
 
 0.655
APZ42_002010
39S ribosomal protein L47.
   
    0.653
APZ42_028680
Zinc phosphodiesterase ELAC protein.
   
 
 0.646
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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