STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ42_021136Putative WD repeat-containing protein 18. (1289 aa)    
Predicted Functional Partners:
APZ42_016915
Tetratricopeptide repeat protein 37.
    
 0.881
APZ42_027248
Helicase SKI2W.
    
 0.870
APZ42_011517
Parafibromin.
    
 0.858
APZ42_021806
RNA polymerase II-associated factor 1.
    
 0.840
APZ42_012190
Putative Another transcription unit protein.
    
 0.814
APZ42_013204
Cytochrome c-2; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
    
 0.783
APZ42_015050
Cyclin-dependent kinase 2-interacting protein.
    
 0.760
APZ42_034474
RNA polymerase-associated protein CTR9.
    
 0.760
APZ42_033653
THO complex subunit 2 protein.
   
  0.758
APZ42_027865
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
 0.758
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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