STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ42_020706Putative ATP-dependent RNA helicase YTHDC2. (1270 aa)    
Predicted Functional Partners:
APZ42_012657
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.962
APZ42_015014
Cleavage and polyadenylation specificity factor subunit 1.
   
 0.956
APZ42_015303
Meckelin.
   
 0.948
APZ42_014949
Fip1 domain-containing protein.
    
 0.921
APZ42_015941
Cleavage stimulation factor subunit 1.
    
 
 0.891
APZ42_026624
Suppressor of forked protein.
    
 
 0.889
APZ42_022523
Uncharacterized protein.
   
 0.879
APZ42_033653
THO complex subunit 2 protein.
   
 0.866
APZ42_013362
Putative Smad nuclear-interacting protein.
    
 0.866
APZ42_018950
Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.
   
 0.865
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.