STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APZ42_019359Protein GCC88. (711 aa)    
Predicted Functional Partners:
APZ42_027865
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
  0.993
EOG090X058P
Cell adhesion complex protein bystin.
   
 0.990
APZ42_016657
Pre-rRNA-processing protein TSR1.
   
 0.981
APZ42_030478
Protein LTV1.
   
 0.974
APZ42_026542
RIO kinase 2.
   
 0.974
EOG090X0APJ
U3 small nucleolar ribonucleoprotein IMP3.
   
 0.967
APZ42_020869
Protein AATF.
   
 
 0.966
APZ42_030862
U3 small nucleolar ribonucleoprotein IMP4.
   
 
 0.964
APZ42_023951
HEAT repeat-containing protein 1.
   
 
 0.959
APZ42_029688
40S ribosomal protein S3.
   
 0.956
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.