Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEV87711.1 | SEV87725.1 | SAMN04487945_0067 | SAMN04487945_0068 | Prephenate dehydrogenase. | Methyltransferase domain-containing protein. | 0.979 |
SEV87711.1 | SEV87880.1 | SAMN04487945_0067 | SAMN04487945_0079 | Prephenate dehydrogenase. | Chorismate mutase. | 0.990 |
SEV87711.1 | SEW00375.1 | SAMN04487945_0067 | SAMN04487945_0851 | Prephenate dehydrogenase. | Aspartate aminotransferase. | 0.967 |
SEV87711.1 | SEW03148.1 | SAMN04487945_0067 | SAMN04487945_1033 | Prephenate dehydrogenase. | Aspartate aminotransferase. | 0.918 |
SEV87711.1 | SEW05689.1 | SAMN04487945_0067 | SAMN04487945_1181 | Prephenate dehydrogenase. | Aspartate/methionine/tyrosine aminotransferase. | 0.921 |
SEV87711.1 | SEW18828.1 | SAMN04487945_0067 | SAMN04487945_2034 | Prephenate dehydrogenase. | Prephenate dehydratase. | 0.986 |
SEV87711.1 | aroC | SAMN04487945_0067 | SAMN04487945_0058 | Prephenate dehydrogenase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.758 |
SEV87711.1 | aroD | SAMN04487945_0067 | SAMN04487945_1228 | Prephenate dehydrogenase. | 3-dehydroquinate dehydratase; Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis- dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3-dehydroshikimate. Belongs to the type-I 3-dehydroquinase family. | 0.666 |
SEV87711.1 | hisC | SAMN04487945_0067 | SAMN04487945_0375 | Prephenate dehydrogenase. | Histidinol phosphate aminotransferase apoenzyme. | 0.967 |
SEV87711.1 | surE | SAMN04487945_0067 | SAMN04487945_0073 | Prephenate dehydrogenase. | 5'-nucleotidase /3'-nucleotidase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.654 |
SEV87725.1 | SEV87711.1 | SAMN04487945_0068 | SAMN04487945_0067 | Methyltransferase domain-containing protein. | Prephenate dehydrogenase. | 0.979 |
SEV87725.1 | SEV87880.1 | SAMN04487945_0068 | SAMN04487945_0079 | Methyltransferase domain-containing protein. | Chorismate mutase. | 0.571 |
SEV87725.1 | surE | SAMN04487945_0068 | SAMN04487945_0073 | Methyltransferase domain-containing protein. | 5'-nucleotidase /3'-nucleotidase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.654 |
SEV87880.1 | SEV87711.1 | SAMN04487945_0079 | SAMN04487945_0067 | Chorismate mutase. | Prephenate dehydrogenase. | 0.990 |
SEV87880.1 | SEV87725.1 | SAMN04487945_0079 | SAMN04487945_0068 | Chorismate mutase. | Methyltransferase domain-containing protein. | 0.571 |
SEV87880.1 | SEW18828.1 | SAMN04487945_0079 | SAMN04487945_2034 | Chorismate mutase. | Prephenate dehydratase. | 0.983 |
SEV87880.1 | aroC | SAMN04487945_0079 | SAMN04487945_0058 | Chorismate mutase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.994 |
SEV87880.1 | aroD | SAMN04487945_0079 | SAMN04487945_1228 | Chorismate mutase. | 3-dehydroquinate dehydratase; Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis- dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3-dehydroshikimate. Belongs to the type-I 3-dehydroquinase family. | 0.686 |
SEV87880.1 | hisC | SAMN04487945_0079 | SAMN04487945_0375 | Chorismate mutase. | Histidinol phosphate aminotransferase apoenzyme. | 0.594 |
SEW00375.1 | SEV87711.1 | SAMN04487945_0851 | SAMN04487945_0067 | Aspartate aminotransferase. | Prephenate dehydrogenase. | 0.967 |
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