CTI12_AA441210 protein (Artemisia annua) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CTI12_AA441210

Ribosomal RNA processing protein 36. (256 aa)

Predicted Functional Partners:

CTI12_AA085290

0.998

CTI12_AA342700

0.996

CTI12_AA284650

0.996

CTI12_AA332780

0.994

CTI12_AA437070

0.993

CTI12_AA371450

0.993

CTI12_AA354280

0.993

CTI12_AA239350

0.993

CTI12_AA153750

0.993

CTI12_AA622530

0.990

Your Current Organism:

Artemisia annua

NCBI taxonomy Id: 35608
Other names: A. annua, Artemisia annua L., sweet Annie, sweet wormwood

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CTI12_AA085290	CTI12_AA153750	A0A2U1Q1Q2	A0A2U1PGU4	Sas10 C-terminal domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.998
CTI12_AA085290	CTI12_AA239350	A0A2U1Q1Q2	A0A2U1NR20	Sas10 C-terminal domain-containing protein.	Ribosomal RNA assembly KRR1.	0.998
CTI12_AA085290	CTI12_AA284650	A0A2U1Q1Q2	A0A2U1NAR2	Sas10 C-terminal domain-containing protein.	Pre-rRNA-processing protein ESF2.	0.667
CTI12_AA085290	CTI12_AA332780	A0A2U1Q1Q2	A0A2U1MW74	Sas10 C-terminal domain-containing protein.	Uncharacterized protein.	0.999
CTI12_AA085290	CTI12_AA342700	A0A2U1Q1Q2	A0A2U1MTU4	Sas10 C-terminal domain-containing protein.	Pre-rRNA-processing protein ESF2.	0.667
CTI12_AA085290	CTI12_AA354280	A0A2U1Q1Q2	A0A2U1MQ79	Sas10 C-terminal domain-containing protein.	Transducin/WD40 repeat-like superfamily protein.	0.995
CTI12_AA085290	CTI12_AA371450	A0A2U1Q1Q2	A0A2U1MKX9	Sas10 C-terminal domain-containing protein.	ATPase, F1/V1/A1 complex, alpha/beta subunit, Zinc knuckle CX2CX4HX4C.	0.998
CTI12_AA085290	CTI12_AA437070	A0A2U1Q1Q2	A0A2U1LZ90	Sas10 C-terminal domain-containing protein.	Transducin/WD40 repeat-like superfamily protein.	0.995
CTI12_AA085290	CTI12_AA441210	A0A2U1Q1Q2	A0A2U1LXL6	Sas10 C-terminal domain-containing protein.	Ribosomal RNA processing protein 36.	0.998
CTI12_AA085290	CTI12_AA622530	A0A2U1Q1Q2	A0A2U1KAZ6	Sas10 C-terminal domain-containing protein.	Digestive organ expansion factor, predicted.	0.990
CTI12_AA153750	CTI12_AA085290	A0A2U1PGU4	A0A2U1Q1Q2	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Sas10 C-terminal domain-containing protein.	0.998
CTI12_AA153750	CTI12_AA284650	A0A2U1PGU4	A0A2U1NAR2	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Pre-rRNA-processing protein ESF2.	0.973
CTI12_AA153750	CTI12_AA332780	A0A2U1PGU4	A0A2U1MW74	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Uncharacterized protein.	0.992
CTI12_AA153750	CTI12_AA342700	A0A2U1PGU4	A0A2U1MTU4	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Pre-rRNA-processing protein ESF2.	0.973
CTI12_AA153750	CTI12_AA354280	A0A2U1PGU4	A0A2U1MQ79	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Transducin/WD40 repeat-like superfamily protein.	0.981
CTI12_AA153750	CTI12_AA437070	A0A2U1PGU4	A0A2U1LZ90	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Transducin/WD40 repeat-like superfamily protein.	0.981
CTI12_AA153750	CTI12_AA441210	A0A2U1PGU4	A0A2U1LXL6	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Ribosomal RNA processing protein 36.	0.993
CTI12_AA153750	CTI12_AA622530	A0A2U1PGU4	A0A2U1KAZ6	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Digestive organ expansion factor, predicted.	0.831
CTI12_AA239350	CTI12_AA085290	A0A2U1NR20	A0A2U1Q1Q2	Ribosomal RNA assembly KRR1.	Sas10 C-terminal domain-containing protein.	0.998
CTI12_AA239350	CTI12_AA284650	A0A2U1NR20	A0A2U1NAR2	Ribosomal RNA assembly KRR1.	Pre-rRNA-processing protein ESF2.	0.973