YABBY-3 protein (Artemisia annua) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

YABBY-3

YABBY transcription factor. (128 aa)

Predicted Functional Partners:

CTI12_AA186830

0.557

CTI12_AA074790

0.557

CTI12_AA060000

0.557

CTI12_AA530560

0.507

CTI12_AA311870

0.476

CTI12_AA498250

0.473

CTI12_AA370680

0.466

CTI12_AA140650

0.456

CTI12_AA591720

0.454

CTI12_AA056660

0.451

Your Current Organism:

Artemisia annua

NCBI taxonomy Id: 35608
Other names: A. annua, Artemisia annua L., sweet Annie, sweet wormwood

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CTI12_AA056660	CTI12_AA140650	A0A2U1Q9W8	A0A2U1PKN9	Non-specific lipid-transfer protein; Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.	Uncharacterized protein.	0.456
CTI12_AA056660	CTI12_AA311870	A0A2U1Q9W8	A0A2U1N3R6	Non-specific lipid-transfer protein; Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.	Uncharacterized protein.	0.510
CTI12_AA056660	CTI12_AA370680	A0A2U1Q9W8	A0A2U1MKG4	Non-specific lipid-transfer protein; Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.	Dihydrolipoamide acetyltransferase, long form protein.	0.457
CTI12_AA056660	CTI12_AA498250	A0A2U1Q9W8	A0A2U1LFW8	Non-specific lipid-transfer protein; Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.	Sequence-specific DNA binding transcription factor.	0.524
CTI12_AA056660	CTI12_AA530560	A0A2U1Q9W8	A0A2U1L4V3	Non-specific lipid-transfer protein; Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.	Sequence-specific DNA binding transcription factor.	0.526
CTI12_AA056660	CTI12_AA591720	A0A2U1Q9W8	A0A2U1KJ23	Non-specific lipid-transfer protein; Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.	Uncharacterized protein.	0.485
CTI12_AA056660	YABBY-3	A0A2U1Q9W8	A0A2U1N1E1	Non-specific lipid-transfer protein; Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.	YABBY transcription factor.	0.451
CTI12_AA060000	YABBY-3	A0A2U1Q8V0	A0A2U1N1E1	High mobility group.	YABBY transcription factor.	0.557
CTI12_AA074790	YABBY-3	A0A2U1Q3E1	A0A2U1N1E1	High mobility group.	YABBY transcription factor.	0.557
CTI12_AA140650	CTI12_AA056660	A0A2U1PKN9	A0A2U1Q9W8	Uncharacterized protein.	Non-specific lipid-transfer protein; Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.	0.456
CTI12_AA140650	CTI12_AA311870	A0A2U1PKN9	A0A2U1N3R6	Uncharacterized protein.	Uncharacterized protein.	0.500
CTI12_AA140650	CTI12_AA370680	A0A2U1PKN9	A0A2U1MKG4	Uncharacterized protein.	Dihydrolipoamide acetyltransferase, long form protein.	0.487
CTI12_AA140650	CTI12_AA498250	A0A2U1PKN9	A0A2U1LFW8	Uncharacterized protein.	Sequence-specific DNA binding transcription factor.	0.472
CTI12_AA140650	CTI12_AA530560	A0A2U1PKN9	A0A2U1L4V3	Uncharacterized protein.	Sequence-specific DNA binding transcription factor.	0.458
CTI12_AA140650	CTI12_AA591720	A0A2U1PKN9	A0A2U1KJ23	Uncharacterized protein.	Uncharacterized protein.	0.528
CTI12_AA140650	YABBY-3	A0A2U1PKN9	A0A2U1N1E1	Uncharacterized protein.	YABBY transcription factor.	0.456
CTI12_AA186830	YABBY-3	A0A2U1P6K1	A0A2U1N1E1	High mobility group.	YABBY transcription factor.	0.557
CTI12_AA311870	CTI12_AA056660	A0A2U1N3R6	A0A2U1Q9W8	Uncharacterized protein.	Non-specific lipid-transfer protein; Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.	0.510
CTI12_AA311870	CTI12_AA140650	A0A2U1N3R6	A0A2U1PKN9	Uncharacterized protein.	Uncharacterized protein.	0.500
CTI12_AA311870	CTI12_AA370680	A0A2U1N3R6	A0A2U1MKG4	Uncharacterized protein.	Dihydrolipoamide acetyltransferase, long form protein.	0.405