CTI12_AA098890 protein (Artemisia annua) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CTI12_AA098890

Methyltransferase. (589 aa)

Predicted Functional Partners:

CTI12_AA431250

0.888

CTI12_AA117020

0.873

CTI12_AA077820

0.873

CTI12_AA582760

0.770

CTI12_AA201440

0.770

CTI12_AA138770

0.770

CTI12_AA145210

0.770

CTI12_AA072600

0.770

CTI12_AA479400

0.768

CTI12_AA047770

0.768

Your Current Organism:

Artemisia annua

NCBI taxonomy Id: 35608
Other names: A. annua, Artemisia annua L., sweet Annie, sweet wormwood

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CTI12_AA047770	CTI12_AA072600	A0A2U1Q607	A0A2U1PW56	Zinc ion binding protein.	Homeodomain-like protein.	0.935
CTI12_AA047770	CTI12_AA077820	A0A2U1Q607	A0A2U1Q402	Zinc ion binding protein.	Actin-related protein 4; Belongs to the actin family.	0.536
CTI12_AA047770	CTI12_AA098890	A0A2U1Q607	A0A2U1NA19	Zinc ion binding protein.	Methyltransferase.	0.768
CTI12_AA047770	CTI12_AA117020	A0A2U1Q607	A0A2U1PSV4	Zinc ion binding protein.	Uncharacterized protein.	0.536
CTI12_AA047770	CTI12_AA138770	A0A2U1Q607	A0A2U1PIW2	Zinc ion binding protein.	SWITCH/sucrose nonfermenting 3C.	0.935
CTI12_AA047770	CTI12_AA145210	A0A2U1Q607	A0A2U1PJ62	Zinc ion binding protein.	Winged helix-turn-helix DNA-binding domain-containing protein.	0.935
CTI12_AA047770	CTI12_AA201440	A0A2U1Q607	A0A2U1P1T4	Zinc ion binding protein.	Switch subunit 3.	0.935
CTI12_AA047770	CTI12_AA431250	A0A2U1Q607	A0A2U1M1E0	Zinc ion binding protein.	Armadillo-like helical.	0.969
CTI12_AA047770	CTI12_AA582760	A0A2U1Q607	A0A2U1KNE0	Zinc ion binding protein.	SWITCH/sucrose nonfermenting 3C.	0.935
CTI12_AA072600	CTI12_AA047770	A0A2U1PW56	A0A2U1Q607	Homeodomain-like protein.	Zinc ion binding protein.	0.935
CTI12_AA072600	CTI12_AA077820	A0A2U1PW56	A0A2U1Q402	Homeodomain-like protein.	Actin-related protein 4; Belongs to the actin family.	0.987
CTI12_AA072600	CTI12_AA098890	A0A2U1PW56	A0A2U1NA19	Homeodomain-like protein.	Methyltransferase.	0.770
CTI12_AA072600	CTI12_AA117020	A0A2U1PW56	A0A2U1PSV4	Homeodomain-like protein.	Uncharacterized protein.	0.987
CTI12_AA072600	CTI12_AA138770	A0A2U1PW56	A0A2U1PIW2	Homeodomain-like protein.	SWITCH/sucrose nonfermenting 3C.	0.501
CTI12_AA072600	CTI12_AA145210	A0A2U1PW56	A0A2U1PJ62	Homeodomain-like protein.	Winged helix-turn-helix DNA-binding domain-containing protein.	0.547
CTI12_AA072600	CTI12_AA201440	A0A2U1PW56	A0A2U1P1T4	Homeodomain-like protein.	Switch subunit 3.	0.719
CTI12_AA072600	CTI12_AA431250	A0A2U1PW56	A0A2U1M1E0	Homeodomain-like protein.	Armadillo-like helical.	0.990
CTI12_AA072600	CTI12_AA479400	A0A2U1PW56	A0A2U1LKS8	Homeodomain-like protein.	Zinc finger, PHD-type, SWIB/MDM2 domain, Plus-3 domain, Zinc finger, RING/FYVE/PHD-type.	0.942
CTI12_AA072600	CTI12_AA582760	A0A2U1PW56	A0A2U1KNE0	Homeodomain-like protein.	SWITCH/sucrose nonfermenting 3C.	0.501
CTI12_AA077820	CTI12_AA047770	A0A2U1Q402	A0A2U1Q607	Actin-related protein 4; Belongs to the actin family.	Zinc ion binding protein.	0.536