STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_216950Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (792 aa)    
Predicted Functional Partners:
SOVF_209870
tRNA-synt_1g domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.995
SOVF_182530
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.995
SOVF_127940
tRNA-binding domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
 0.995
SOVF_147360
AA_TRNA_LIGASE_II domain-containing protein.
 
 0.981
SOVF_099520
AA_TRNA_LIGASE_II domain-containing protein.
 
 0.981
GATB
Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatB/GatE family. GatB subfamily.
  
 0.969
SOVF_094520
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 0.966
SOVF_068230
Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.
   
 0.965
SOVF_054480
Uncharacterized protein.
   
 0.962
SOVF_098200
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.957
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.