STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_216850Uncharacterized protein. (274 aa)    
Predicted Functional Partners:
SOVF_024920
Uncharacterized protein.
 
 0.992
SOVF_010110
SRP54 domain-containing protein.
     
 0.567
SOVF_198800
Uncharacterized protein.
     
 0.527
SOVF_149960
RNA_pol_sigma70 domain-containing protein.
     
 0.498
SOVF_113050
Uncharacterized protein.
      
 0.495
SOVF_140140
Thioredoxin domain-containing protein.
  
  
 0.487
SOVF_016950
Uncharacterized protein.
  
  
 0.487
ccsA
Cytochrome c biogenesis protein CcsA; Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment.
     
 0.460
SOVF_216870
D-aminoacyl-tRNA deacylase.
     
 0.439
SOVF_202070
Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
  
 0.436
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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