SOVF_209590 protein (Spinacia oleracea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SOVF_209590

SpoU_methylase domain-containing protein. (157 aa)

Predicted Functional Partners:

SOVF_081680

0.666

SOVF_086320

0.666

SOVF_161140

0.622

SOVF_005610

0.622

SOVF_068790

0.617

SOVF_034400

0.608

SOVF_033160

0.607

SOVF_171320

0.580

SOVF_197200

0.571

COQ3

0.500

Your Current Organism:

Spinacia oleracea

NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COQ3	SOVF_209590	A0A0K9QRD9	A0A0K9Q824	Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.	SpoU_methylase domain-containing protein.	0.500
SOVF_005610	SOVF_033160	A0A0K9S370	A0A0K9RST9	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	TP_methylase domain-containing protein.	0.545
SOVF_005610	SOVF_034400	A0A0K9S370	A0A0K9RS60	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	Uncharacterized protein.	0.554
SOVF_005610	SOVF_068790	A0A0K9S370	A0A0K9RI91	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	Uncharacterized protein.	0.606
SOVF_005610	SOVF_081680	A0A0K9S370	A0A0K9RCN7	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	Uncharacterized protein.	0.535
SOVF_005610	SOVF_086320	A0A0K9S370	A0A0K9RD57	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	Uncharacterized protein.	0.607
SOVF_005610	SOVF_161140	A0A0K9S370	A0A0K9QMV1	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	Uncharacterized protein.	0.572
SOVF_005610	SOVF_209590	A0A0K9S370	A0A0K9Q824	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	SpoU_methylase domain-containing protein.	0.622
SOVF_033160	SOVF_005610	A0A0K9RST9	A0A0K9S370	TP_methylase domain-containing protein.	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	0.545
SOVF_033160	SOVF_034400	A0A0K9RST9	A0A0K9RS60	TP_methylase domain-containing protein.	Uncharacterized protein.	0.666
SOVF_033160	SOVF_068790	A0A0K9RST9	A0A0K9RI91	TP_methylase domain-containing protein.	Uncharacterized protein.	0.612
SOVF_033160	SOVF_081680	A0A0K9RST9	A0A0K9RCN7	TP_methylase domain-containing protein.	Uncharacterized protein.	0.666
SOVF_033160	SOVF_086320	A0A0K9RST9	A0A0K9RD57	TP_methylase domain-containing protein.	Uncharacterized protein.	0.619
SOVF_033160	SOVF_161140	A0A0K9RST9	A0A0K9QMV1	TP_methylase domain-containing protein.	Uncharacterized protein.	0.545
SOVF_033160	SOVF_209590	A0A0K9RST9	A0A0K9Q824	TP_methylase domain-containing protein.	SpoU_methylase domain-containing protein.	0.607
SOVF_034400	SOVF_005610	A0A0K9RS60	A0A0K9S370	Uncharacterized protein.	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.	0.554
SOVF_034400	SOVF_033160	A0A0K9RS60	A0A0K9RST9	Uncharacterized protein.	TP_methylase domain-containing protein.	0.666
SOVF_034400	SOVF_068790	A0A0K9RS60	A0A0K9RI91	Uncharacterized protein.	Uncharacterized protein.	0.614
SOVF_034400	SOVF_081680	A0A0K9RS60	A0A0K9RCN7	Uncharacterized protein.	Uncharacterized protein.	0.607
SOVF_034400	SOVF_086320	A0A0K9RS60	A0A0K9RD57	Uncharacterized protein.	Uncharacterized protein.	0.651