SOVF_202380 protein (Spinacia oleracea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SOVF_202380

Uncharacterized protein; Belongs to the membrane-bound acyltransferase family. (315 aa)

Predicted Functional Partners:

SOVF_022220

0.955

SOVF_096830

0.940

SOVF_199180

0.837

SOVF_151930

0.837

SOVF_085120

0.837

SOVF_039930

0.837

SOVF_032870

0.837

SOVF_018310

0.837

SOVF_183290

0.612

SOVF_116730

0.598

Your Current Organism:

Spinacia oleracea

NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SOVF_018310	SOVF_022220	A0A0K9RX15	A0A0K9RWC9	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Uncharacterized protein.	0.952
SOVF_018310	SOVF_039930	A0A0K9RX15	A0A0K9RQL5	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.530
SOVF_018310	SOVF_085120	A0A0K9RX15	A0A0K9RBF2	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.485
SOVF_018310	SOVF_096830	A0A0K9RX15	A0A0K9R7V2	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Uncharacterized protein.	0.837
SOVF_018310	SOVF_151930	A0A0K9RX15	A0A0K9QSS7	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.906
SOVF_018310	SOVF_199180	A0A0K9RX15	A0A0K9QD69	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.984
SOVF_018310	SOVF_202380	A0A0K9RX15	A0A0K9QA56	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Uncharacterized protein; Belongs to the membrane-bound acyltransferase family.	0.837
SOVF_022220	SOVF_018310	A0A0K9RWC9	A0A0K9RX15	Uncharacterized protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.952
SOVF_022220	SOVF_032870	A0A0K9RWC9	A0A0K9RSW4	Uncharacterized protein.	CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.	0.952
SOVF_022220	SOVF_039930	A0A0K9RWC9	A0A0K9RQL5	Uncharacterized protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.952
SOVF_022220	SOVF_085120	A0A0K9RWC9	A0A0K9RBF2	Uncharacterized protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.952
SOVF_022220	SOVF_096830	A0A0K9RWC9	A0A0K9R7V2	Uncharacterized protein.	Uncharacterized protein.	0.955
SOVF_022220	SOVF_151930	A0A0K9RWC9	A0A0K9QSS7	Uncharacterized protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.952
SOVF_022220	SOVF_199180	A0A0K9RWC9	A0A0K9QD69	Uncharacterized protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.952
SOVF_022220	SOVF_202380	A0A0K9RWC9	A0A0K9QA56	Uncharacterized protein.	Uncharacterized protein; Belongs to the membrane-bound acyltransferase family.	0.955
SOVF_032870	SOVF_022220	A0A0K9RSW4	A0A0K9RWC9	CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.	Uncharacterized protein.	0.952
SOVF_032870	SOVF_096830	A0A0K9RSW4	A0A0K9R7V2	CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.	Uncharacterized protein.	0.837
SOVF_032870	SOVF_202380	A0A0K9RSW4	A0A0K9QA56	CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.	Uncharacterized protein; Belongs to the membrane-bound acyltransferase family.	0.837
SOVF_039930	SOVF_018310	A0A0K9RQL5	A0A0K9RX15	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.530
SOVF_039930	SOVF_022220	A0A0K9RQL5	A0A0K9RWC9	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Uncharacterized protein.	0.952