SOVF_197600 protein (Spinacia oleracea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SOVF_197600

Uncharacterized protein. (265 aa)

Predicted Functional Partners:

SOVF_010860

0.784

SOVF_022300

0.754

SOVF_093210

0.741

SOVF_062920

0.736

SOVF_013530

0.729

SOVF_054480

0.639

SOVF_076880

0.637

SOVF_029460

0.637

SOVF_155040

0.633

SOVF_049780

0.633

Your Current Organism:

Spinacia oleracea

NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SOVF_010860	SOVF_013530	A0A0K9RZS4	A0A0K9RBJ3	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.999
SOVF_010860	SOVF_022300	A0A0K9RZS4	A0A0K9RW45	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.999
SOVF_010860	SOVF_029460	A0A0K9RZS4	A0A0K9RVF2	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	S10_plectin domain-containing protein.	0.998
SOVF_010860	SOVF_049780	A0A0K9RZS4	A0A0K9RPC5	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	0.998
SOVF_010860	SOVF_054480	A0A0K9RZS4	A0A0K9RMZ6	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.999
SOVF_010860	SOVF_062920	A0A0K9RZS4	A0A0K9QI80	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	0.999
SOVF_010860	SOVF_076880	A0A0K9RZS4	A0A0K9RE56	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	S10_plectin domain-containing protein.	0.998
SOVF_010860	SOVF_093210	A0A0K9RZS4	A0A0K9R916	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.	0.999
SOVF_010860	SOVF_155040	A0A0K9RZS4	A0A0K9QRZ2	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	0.998
SOVF_010860	SOVF_197600	A0A0K9RZS4	A0A0K9QBL8	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.784
SOVF_013530	SOVF_010860	A0A0K9RBJ3	A0A0K9RZS4	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	0.999
SOVF_013530	SOVF_022300	A0A0K9RBJ3	A0A0K9RW45	Uncharacterized protein.	Uncharacterized protein.	0.999
SOVF_013530	SOVF_029460	A0A0K9RBJ3	A0A0K9RVF2	Uncharacterized protein.	S10_plectin domain-containing protein.	0.998
SOVF_013530	SOVF_049780	A0A0K9RBJ3	A0A0K9RPC5	Uncharacterized protein.	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	0.998
SOVF_013530	SOVF_054480	A0A0K9RBJ3	A0A0K9RMZ6	Uncharacterized protein.	Uncharacterized protein.	0.999
SOVF_013530	SOVF_062920	A0A0K9RBJ3	A0A0K9QI80	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	0.999
SOVF_013530	SOVF_076880	A0A0K9RBJ3	A0A0K9RE56	Uncharacterized protein.	S10_plectin domain-containing protein.	0.998
SOVF_013530	SOVF_093210	A0A0K9RBJ3	A0A0K9R916	Uncharacterized protein.	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.	0.999
SOVF_013530	SOVF_155040	A0A0K9RBJ3	A0A0K9QRZ2	Uncharacterized protein.	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	0.998
SOVF_013530	SOVF_197600	A0A0K9RBJ3	A0A0K9QBL8	Uncharacterized protein.	Uncharacterized protein.	0.729