STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOVF_198270Calcium load-activated calcium channel; Calcium-selective channel required to prevent calcium stores from overfilling. (188 aa)    
Predicted Functional Partners:
SOVF_208190
Uncharacterized protein.
    
 
 0.920
SOVF_049670
Uncharacterized protein.
   
 
 0.903
SOVF_119310
Uncharacterized protein.
   
 
 0.891
SOVF_185120
Uncharacterized protein.
  
   0.846
SOVF_162600
B5 domain-containing protein.
 
      0.840
SOVF_193480
B5 domain-containing protein.
 
      0.828
SOVF_031540
Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.
   
   0.822
SOVF_094520
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
   0.769
SOVF_147080
Ribosomal_L18_c domain-containing protein.
    
   0.766
SOVF_069240
Uncharacterized protein.
    
   0.766
Your Current Organism:
Spinacia oleracea
NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.