SOVF_192880 protein (Spinacia oleracea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SOVF_192880

Uncharacterized protein. (419 aa)

Predicted Functional Partners:

SOVF_060000

0.444

SOVF_153760

0.441

SOVF_008050

0.429

SOVF_008620

0.418

SOVF_036620

0.412

SOVF_126270

0.406

Your Current Organism:

Spinacia oleracea

NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SOVF_008050	SOVF_060000	A0A0K9S0I3	A0A0K9RJF3	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Nuclear cap-binding protein subunit 2.	0.495
SOVF_008050	SOVF_153760	A0A0K9S0I3	A0A0K9QQ75	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	MIF4G domain-containing protein.	0.728
SOVF_008050	SOVF_192880	A0A0K9S0I3	A0A0K9QES4	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	Uncharacterized protein.	0.429
SOVF_008620	SOVF_060000	A0A0K9S0E7	A0A0K9RJF3	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	Nuclear cap-binding protein subunit 2.	0.984
SOVF_008620	SOVF_153760	A0A0K9S0E7	A0A0K9QQ75	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	MIF4G domain-containing protein.	0.977
SOVF_008620	SOVF_192880	A0A0K9S0E7	A0A0K9QES4	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	Uncharacterized protein.	0.418
SOVF_036620	SOVF_060000	A0A0K9RRI1	A0A0K9RJF3	RRM domain-containing protein.	Nuclear cap-binding protein subunit 2.	0.752
SOVF_036620	SOVF_153760	A0A0K9RRI1	A0A0K9QQ75	RRM domain-containing protein.	MIF4G domain-containing protein.	0.772
SOVF_036620	SOVF_192880	A0A0K9RRI1	A0A0K9QES4	RRM domain-containing protein.	Uncharacterized protein.	0.412
SOVF_060000	SOVF_008050	A0A0K9RJF3	A0A0K9S0I3	Nuclear cap-binding protein subunit 2.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.495
SOVF_060000	SOVF_008620	A0A0K9RJF3	A0A0K9S0E7	Nuclear cap-binding protein subunit 2.	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	0.984
SOVF_060000	SOVF_036620	A0A0K9RJF3	A0A0K9RRI1	Nuclear cap-binding protein subunit 2.	RRM domain-containing protein.	0.752
SOVF_060000	SOVF_126270	A0A0K9RJF3	A0A0K9QYQ0	Nuclear cap-binding protein subunit 2.	RRM domain-containing protein.	0.752
SOVF_060000	SOVF_153760	A0A0K9RJF3	A0A0K9QQ75	Nuclear cap-binding protein subunit 2.	MIF4G domain-containing protein.	0.999
SOVF_060000	SOVF_192880	A0A0K9RJF3	A0A0K9QES4	Nuclear cap-binding protein subunit 2.	Uncharacterized protein.	0.444
SOVF_126270	SOVF_060000	A0A0K9QYQ0	A0A0K9RJF3	RRM domain-containing protein.	Nuclear cap-binding protein subunit 2.	0.752
SOVF_126270	SOVF_153760	A0A0K9QYQ0	A0A0K9QQ75	RRM domain-containing protein.	MIF4G domain-containing protein.	0.772
SOVF_126270	SOVF_192880	A0A0K9QYQ0	A0A0K9QES4	RRM domain-containing protein.	Uncharacterized protein.	0.406
SOVF_153760	SOVF_008050	A0A0K9QQ75	A0A0K9S0I3	MIF4G domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.728
SOVF_153760	SOVF_008620	A0A0K9QQ75	A0A0K9S0E7	MIF4G domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	0.977