SOVF_186470 protein (Spinacia oleracea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SOVF_186470

Glutamate decarboxylase; Belongs to the group II decarboxylase family. (508 aa)

Predicted Functional Partners:

SOVF_139430

0.939

SOVF_104730

0.939

SOVF_021270

0.935

SOVF_014260

0.935

SOVF_014280

0.935

SOVF_056280

0.932

SOVF_007040

0.917

SOVF_031810

0.906

SOVF_156520

0.906

GS1

0.906

Your Current Organism:

Spinacia oleracea

NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GS1	SOVF_007040	A7UGI6	A0A0K9S0U5	Glutamine synthetase.	Uncharacterized protein.	0.862
GS1	SOVF_021270	A7UGI6	A0A0K9RW84	Glutamine synthetase.	Aldedh domain-containing protein.	0.917
GS1	SOVF_031810	A7UGI6	A0A0K9RUW5	Glutamine synthetase.	Glutamine synthetase.	0.900
GS1	SOVF_104730	A7UGI6	A0A0K9R5H4	Glutamine synthetase.	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.952
GS1	SOVF_139430	A7UGI6	A0A0K9QW70	Glutamine synthetase.	ELFV_dehydrog domain-containing protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.949
GS1	SOVF_156520	A7UGI6	A1YYP7	Glutamine synthetase.	Glutamine synthetase.	0.901
GS1	SOVF_186470	A7UGI6	A0A0K9QF20	Glutamine synthetase.	Glutamate decarboxylase; Belongs to the group II decarboxylase family.	0.906
SOVF_007040	GS1	A0A0K9S0U5	A7UGI6	Uncharacterized protein.	Glutamine synthetase.	0.862
SOVF_007040	SOVF_021270	A0A0K9S0U5	A0A0K9RW84	Uncharacterized protein.	Aldedh domain-containing protein.	0.830
SOVF_007040	SOVF_031810	A0A0K9S0U5	A0A0K9RUW5	Uncharacterized protein.	Glutamine synthetase.	0.862
SOVF_007040	SOVF_104730	A0A0K9S0U5	A0A0K9R5H4	Uncharacterized protein.	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.882
SOVF_007040	SOVF_139430	A0A0K9S0U5	A0A0K9QW70	Uncharacterized protein.	ELFV_dehydrog domain-containing protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.882
SOVF_007040	SOVF_156520	A0A0K9S0U5	A1YYP7	Uncharacterized protein.	Glutamine synthetase.	0.862
SOVF_007040	SOVF_186470	A0A0K9S0U5	A0A0K9QF20	Uncharacterized protein.	Glutamate decarboxylase; Belongs to the group II decarboxylase family.	0.917
SOVF_014260	SOVF_014280	A0A0K9RYH8	A0A0K9RYM2	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.900
SOVF_014260	SOVF_021270	A0A0K9RYH8	A0A0K9RW84	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Aldedh domain-containing protein.	0.412
SOVF_014260	SOVF_104730	A0A0K9RYH8	A0A0K9R5H4	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.499
SOVF_014260	SOVF_139430	A0A0K9RYH8	A0A0K9QW70	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	ELFV_dehydrog domain-containing protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.499
SOVF_014260	SOVF_186470	A0A0K9RYH8	A0A0K9QF20	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Glutamate decarboxylase; Belongs to the group II decarboxylase family.	0.935
SOVF_014280	SOVF_014260	A0A0K9RYM2	A0A0K9RYH8	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.900