SOVF_189380 protein (Spinacia oleracea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SOVF_189380

Glyco_hydro_85 domain-containing protein. (287 aa)

Predicted Functional Partners:

SOVF_190140

0.923

SOVF_061190

0.500

SOVF_103040

0.493

SOVF_078370

0.493

SOVF_034880

0.493

SOVF_115080

0.472

SOVF_102390

0.439

SOVF_200540

0.426

Your Current Organism:

Spinacia oleracea

NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SOVF_034880	SOVF_102390	A0A0K9RKZ3	A0A0K9R642	Ubiquitin-like domain-containing protein.	TGc domain-containing protein.	0.771
SOVF_034880	SOVF_103040	A0A0K9RKZ3	A0A0K9R5W5	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.900
SOVF_034880	SOVF_189380	A0A0K9RKZ3	A0A0K9QFS3	Ubiquitin-like domain-containing protein.	Glyco_hydro_85 domain-containing protein.	0.493
SOVF_034880	SOVF_190140	A0A0K9RKZ3	A0A0K9QDW4	Ubiquitin-like domain-containing protein.	Glyco_hydro_85 domain-containing protein.	0.493
SOVF_061190	SOVF_189380	A0A0K9RJ02	A0A0K9QFS3	Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.	Glyco_hydro_85 domain-containing protein.	0.500
SOVF_078370	SOVF_102390	A0A0K9RDN9	A0A0K9R642	Ribosomal_S27 domain-containing protein.	TGc domain-containing protein.	0.771
SOVF_078370	SOVF_189380	A0A0K9RDN9	A0A0K9QFS3	Ribosomal_S27 domain-containing protein.	Glyco_hydro_85 domain-containing protein.	0.493
SOVF_078370	SOVF_190140	A0A0K9RDN9	A0A0K9QDW4	Ribosomal_S27 domain-containing protein.	Glyco_hydro_85 domain-containing protein.	0.493
SOVF_102390	SOVF_034880	A0A0K9R642	A0A0K9RKZ3	TGc domain-containing protein.	Ubiquitin-like domain-containing protein.	0.771
SOVF_102390	SOVF_078370	A0A0K9R642	A0A0K9RDN9	TGc domain-containing protein.	Ribosomal_S27 domain-containing protein.	0.771
SOVF_102390	SOVF_103040	A0A0K9R642	A0A0K9R5W5	TGc domain-containing protein.	Ubiquitin-like domain-containing protein.	0.771
SOVF_102390	SOVF_189380	A0A0K9R642	A0A0K9QFS3	TGc domain-containing protein.	Glyco_hydro_85 domain-containing protein.	0.439
SOVF_102390	SOVF_190140	A0A0K9R642	A0A0K9QDW4	TGc domain-containing protein.	Glyco_hydro_85 domain-containing protein.	0.439
SOVF_103040	SOVF_034880	A0A0K9R5W5	A0A0K9RKZ3	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.900
SOVF_103040	SOVF_102390	A0A0K9R5W5	A0A0K9R642	Ubiquitin-like domain-containing protein.	TGc domain-containing protein.	0.771
SOVF_103040	SOVF_189380	A0A0K9R5W5	A0A0K9QFS3	Ubiquitin-like domain-containing protein.	Glyco_hydro_85 domain-containing protein.	0.493
SOVF_103040	SOVF_190140	A0A0K9R5W5	A0A0K9QDW4	Ubiquitin-like domain-containing protein.	Glyco_hydro_85 domain-containing protein.	0.493
SOVF_115080	SOVF_189380	A0A0K9R3V3	A0A0K9QFS3	Chorismate synthase.	Glyco_hydro_85 domain-containing protein.	0.472
SOVF_189380	SOVF_034880	A0A0K9QFS3	A0A0K9RKZ3	Glyco_hydro_85 domain-containing protein.	Ubiquitin-like domain-containing protein.	0.493
SOVF_189380	SOVF_061190	A0A0K9QFS3	A0A0K9RJ02	Glyco_hydro_85 domain-containing protein.	Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.	0.500