SOVF_182660 protein (Spinacia oleracea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SOVF_182660

Uncharacterized protein. (150 aa)

Predicted Functional Partners:

SOVF_154600

0.879

SOVF_084180

0.695

SOVF_099120

0.622

SOVF_073470

0.605

SOVF_076470

0.586

SOVF_151020

0.562

SOVF_094190

0.562

SOVF_040360

0.562

SOVF_183190

0.533

SOVF_175230

0.533

Your Current Organism:

Spinacia oleracea

NCBI taxonomy Id: 3562
Other names: S. oleracea, Spinacea oleracea, Spinacia oleracea L., spinach

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SOVF_040360	SOVF_073470	A0A0K9RS52	A0A0K9RF84	ATPase_AAA_core domain-containing protein.	Uncharacterized protein.	0.480
SOVF_040360	SOVF_076470	A0A0K9RS52	A0A0K9RED8	ATPase_AAA_core domain-containing protein.	Proteasome subunit beta; Belongs to the peptidase T1B family.	0.985
SOVF_040360	SOVF_084180	A0A0K9RS52	A0A0K9RBE5	ATPase_AAA_core domain-containing protein.	Uncharacterized protein.	0.894
SOVF_040360	SOVF_094190	A0A0K9RS52	A0A0K9RA51	ATPase_AAA_core domain-containing protein.	26S proteasome non-ATPase regulatory subunit 2 homolog; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.982
SOVF_040360	SOVF_099120	A0A0K9RS52	A0A0K9R856	ATPase_AAA_core domain-containing protein.	PCI domain-containing protein.	0.984
SOVF_040360	SOVF_154600	A0A0K9RS52	A0A0K9QPY6	ATPase_AAA_core domain-containing protein.	VWFA domain-containing protein.	0.989
SOVF_040360	SOVF_175230	A0A0K9RS52	A0A0K9QIE2	ATPase_AAA_core domain-containing protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.969
SOVF_040360	SOVF_182660	A0A0K9RS52	A0A0K9QG61	ATPase_AAA_core domain-containing protein.	Uncharacterized protein.	0.562
SOVF_040360	SOVF_183190	A0A0K9RS52	A0A0K9QG12	ATPase_AAA_core domain-containing protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.969
SOVF_073470	SOVF_040360	A0A0K9RF84	A0A0K9RS52	Uncharacterized protein.	ATPase_AAA_core domain-containing protein.	0.480
SOVF_073470	SOVF_076470	A0A0K9RF84	A0A0K9RED8	Uncharacterized protein.	Proteasome subunit beta; Belongs to the peptidase T1B family.	0.600
SOVF_073470	SOVF_084180	A0A0K9RF84	A0A0K9RBE5	Uncharacterized protein.	Uncharacterized protein.	0.599
SOVF_073470	SOVF_094190	A0A0K9RF84	A0A0K9RA51	Uncharacterized protein.	26S proteasome non-ATPase regulatory subunit 2 homolog; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.943
SOVF_073470	SOVF_099120	A0A0K9RF84	A0A0K9R856	Uncharacterized protein.	PCI domain-containing protein.	0.903
SOVF_073470	SOVF_151020	A0A0K9RF84	A0A0K9QSR5	Uncharacterized protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.480
SOVF_073470	SOVF_154600	A0A0K9RF84	A0A0K9QPY6	Uncharacterized protein.	VWFA domain-containing protein.	0.982
SOVF_073470	SOVF_175230	A0A0K9RF84	A0A0K9QIE2	Uncharacterized protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.834
SOVF_073470	SOVF_182660	A0A0K9RF84	A0A0K9QG61	Uncharacterized protein.	Uncharacterized protein.	0.605
SOVF_073470	SOVF_183190	A0A0K9RF84	A0A0K9QG12	Uncharacterized protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.834
SOVF_076470	SOVF_040360	A0A0K9RED8	A0A0K9RS52	Proteasome subunit beta; Belongs to the peptidase T1B family.	ATPase_AAA_core domain-containing protein.	0.985